PUBLICATIONS
Our technologies have been the subject of over 300 peer reviewed publications in such prestigious journals as Science, Nature, The Lancet, and Cell. Topics include Cancer genetics, Cytogenetics (human, mouse, and primate), Spectral Pathology, Optical Physics, Live Cell Imaging, and Multi-probe Spectral FISH.

Human Spectral Karyotyping (SKY™) Spectral Morphometry
Spectral Fluorescence In Situ Hybridization
(Spectral FISH)
Spectral Bio-Imaging (non-SKY, non-spectral immunofluorescence, non-spectral morphometry)
Mouse Spectral Karyotyping SKY™ Reviews and Book Chapters
Comparative SKY™genomics The SpectraCube® Technology
Spectral Immunofluorescence Additional ASI Publications

 

Human Spectral Karyotyping (SKY™)

Abdel-Rahman WM, Katsura K, Rens W, Gorman PA, Sheer D, Bicknell D, Bodmer WF, Arends MJ, Wyllie AH, Edwards PA. (2001) Spectral karyotyping suggests additional subsets of colorectal cancers characterized by pattern of chromosome rearrangement. Proc Natl Acad Sci USA 98: 2538-2543.

K.K. Aben, M.V. Macville, D.F. Smeets, M.P. Schoenberg, J.A. Witjes, L.A. Kiemeney (2001) Absence of karyotype abnormalities in patients with familial urothelial cell carcinoma. Urology 57: 266-269.

A. Adeyinka, S. Kytola, F. Mertens, N. Pandis, C. Larsson (2000) Spectral karyotyping and chromosome banding studies of primary breast carcinomas and their lymph node metastases. Int J Mol Med 5: 235-240.

R.J. Allen, S.D. Smith, R.L. Moldwin, M.M. Lu, L. Giordano, C. Vignon, Y. Suto, A. Harden, R. Tomek, T. Veldman, T. Ried, R.A. Larson, M.M. Le Beau, J.D. Rowley, N. Zeleznik-Le (1998) Establishment and characterization of a megakaryoblast cell line with amplification of MLL. Leukemia 12: 1119-1127.

H.G. Ahuja, L. Popplewell, L. Tcheurekdjian, M.L. Slovak (2001) NUP98 gene rearrangements and the clonal evolution of chronic myelogenous leukemia. Genes, Chromosomes and Cancer30: 410-415.

Anderlid BM, Schoumans J, Anneren G, Sahlen S, Kyllerman M, Vujic M, Hagberg B, Blennow E, Nordenskjold M. (2002) Subtelomeric rearrangements detected in patients with idiopathic mental retardation.
Am J Med Genet. 107: 275-284.

Y. Ariyama, Y. Fukuda, Y. Okuno, M. Seto, K. Date, T. Abe, Y. Nakamura, J. Inazawa (1998) Amplification on double-minute chromosomes and partial-tandem duplication of the MLL gene in leukemic cells of a patient with acute myelogenous leukemia. Genes Chromosomes Cancer 23: 267-72.

Y. Ariyama, T. Sakabe, T. Shinomiya, T. Mori, Y. Fukuda, J. Inazawa. (1998) Identification of amplified DNA sequences on double minute chromosomes in a leukemic cell line KY821 by means of spectral karyotyping and comparative genomic hybridization. J. Hum. Genet. 43: 187-190.

C. Astbury, C.K. Jackson-Cook, S.H. Culp, T.E. Paisley, J.L. Ware (2001) Suppression of tumorigenicity in the human prostate cancer cell line M12 via microcell-mediated restoration of chromosome 19. Genes, Chromosomes and Cancer 31: 143-155.

M. Barnard, J. Bayani, R. Grant, I. Teshima, P., J. Squire (2000) Use of multicolor spectral karyotyping in genetic analysis of pleuropulmonary blastoma. Pediatr Dev Pathol. 3: 479-486.

J. Bayani, M. Zielenska, P. Marrano, N.G. Kwan, M.D. Taylor, V. Jay, J.T. Rutka, J.A. Squire (2000) Molecular cytogenetic analysis of medulloblastomas and supratentorial primitive neuroectodermal tumors by using conventional banding, comparative genomic hybridization, and spectral karyotyping. J Neurosurg. 93: 437-448.

J. Bayani, A. Pandita, J.A. Squire (2000) Sequential G-banding, SKY and FISH provides a refined identification of translocation breakpoints and complex chromosomal rearrangements. Technical Tips Online 01864.

B. Beheshti, P.C. Park, J.M. Sweet, J. Trachtenberg, M.A. Jewett, J.A. Squire JA (2001) Evidence of Chromosomal instability in prostate cancer determined by spectral karyotyping (SKY) and interphase FISH analysis. Neoplasia 3: 62-69.

B. Beheshti, J. Karaskova, P.C. Park, J.A. Squire, B.G. Beatty (2000) Identification of a high frequency of chromosomal rearrangements in the centromeric regions of prostate cancer cell lines by sequential Giemsa-banding and spectral karyotyping. Molecular Diagnosis 5: 23-32.

K.C. Bible, S.A. Boerner, K. Kirkland, K.L. Anderl, D. Bartelt Jr, P.A. Svingen, T.J. Kottke, Y.K. Lee, S. Eckdahl, P.G. Stalboerger, R.B. Jenkins, S.H. Kaufmann (2000) Characterization of an ovarian carcinoma cell line resistant to cisplatin and flavopiridol. Clinical Cancer Res. 6:661-670.

G. Borck, J Wirth, T Hardt, H Tönnies, K Brøndum-Nielsen, M Bugge, N Tommerup, H-G Nothwang, H-H Ropers, And T Haaf (2001) Molecular cytogenetic characterisation of a complex 46,XY,t(7;8;11;13) chromosome rearrangement in a patient with Moebius syndrome. J Med Genet 38: 117-121.

G. Calabrese, D. Fantasia, P.G. Franch, E. Morizio, L. Stuppia, V. Gatta, P. Olioso, R. Mingarelli, A. Spadano, G. Palka (2000) Spectral karyotyping (SKY) refinement of a complex karyotype with t(20;21) in a Ph-positive CML patient submitted to peripheral blood stem cell transplantation. Bone Marrow Transplant 26: 1125-1127.

G. Calabrese, D. Fantasia, A. Spadano, M. Morizio, P. Di Bartolomeo, G. Palka (2000) Karyotype refinement in five patients with acute myeloid leukemia using spectral karyotyping. Haematologica 85: 1219-1221.

C.G. Carlotti Jr, J.M. Drake, J. Hladky, I. Teshima, L.E. Becker, J.T. Rutka (1999) Primary Ewing's sarcoma of the skull in children. Utility of molecular diagnostics, surgery and adjuvant therapies. Pediatr Neurosurg. 31: 307-315.

J.A. Caruso, J.J. Reiners, J. Emond, T. Shultz, M.A. Tainsky, M. Alaoui-Jamali, G. Batist (2001) Genetic alteration of chromosome 8 is a common feature of human mammary epithelial cell lines transformed in vitro with benzo[a]pyrene. Mutat Res. 473: 85-99.

S.R. Chaganti, P.H. Rao, W. Chen, V. Dyomin, S.C. Jhanwar, N.Z. Parsa, R. Dalla-Favera, R.S.K. Chaganti (1998) Deregulation of BCL6 in non-Hodgkin lymphoma by insertion of IgH sequences in complex translocations involving band 3q27. Genes Chromosomes Cancer 23: 328-336.

Chen Z, Coffin CM, Smith LM, Issa B, Arndt S, Shepard R, Brothman L, Stratton J, Brothman AR, Zhou H. (2001) Cytogenetic-clinicopathologic correlations in rhabdomyosarcoma: a report of five cases. Cancer Genet Cytogenet. 131: 31-36.

Z. Chen, C.M. Coffin, S. Scott, A. Meloni-Ehrig, R. Shepard, B. Issa, D.R. Forsyth, A.A. Sandberg, A.R. Brothman, A. Lowichik A. (2000) Evidence by spectral karyotyping that 8q11.2 is nonrandomly involved in lipoblastoma.
J Mol Diagn. 2:73-77.

Clarkson B, Pavenski K, Dupuis L, Kennedy S, Meyn S, Nezarati MM, Nie G, Weksberg R, Withers S, Quercia N, Teebi AS, Teshima I. (2002) Detecting rearrangements in children using subtelomeric FISH and SKY.
Am J Med Genet. 107: 267-274.

I.J. Cohen, J. Issakov, S. Avigad, B. Stark, I. Meller, R. Zaizov, I. Bar-Am (1997) Synovial sarcoma of bone delineated by spectral karyotyping. The Lancet 350:1679-1680.

Stark, S. Avigad (2000) Letter to the editor: synovial sarcoma mimicking desmoplastic small round-cell tumor: critical role for molecular diagnosis. Med. Pediatr. Oncol. 34: 234.

N. Cohen, D.R. Betts, L. Trakhtenbrot, F.K. Niggli, N. Amariglio, F. Brok-Simoni, G. Rechavi, D. Meitar (2001) Detection of unidentified chromosome abnormalities in human neuroblastoma by spectral karyotyping (SKY). Genes Chromosomes Cancer 31: 201-208.

A. Cottage, S. Dowen, I. Roberts, M. Pett, N. Coleman, M. Stanley (2000) Early genetic events in HPV immortalised keratinocytes. Genes Chromosomes Cancer 31: 72-79.

J.M. Davidson, K.L. GorringeL, S.F. Chin, B. Orsetti, C. Besret, C. Courtay-Cahen, I. Roberts, C. Theillet, C. Caldas, P.A. Edwards (2000) Molecular cytogenetic analysis of breast cancer cell lines. Br J Cancer 83: 1309-1317.

R.R. De Krijger, C.M Mooy, J.O. Van Hemel, E.J. Sulkers, J.M. Kros, M.M. Bartelings, L.C. Govaerts (1999) CHARGE association-related ocular pathology in a newborn with partial trisomy 19q and partial monosomy 21q, from a maternal translocation (19;21)(q13.1;q22.3). Pediatr Dev Pathol 2: 577-0581

T.R. Dennis, A.D. Stock (1999) A molecular cytogenetic study of chromosome 3 rearrangements in small cell lung cancer; consistent involvement of chromosome band 3q13.2. Cancer Genet. Cytogenet. 113: 134-140.

S. Dhar, J.A. Squire, M.P. Hande, R.J. Wellinger, T.K. Pandita (2000) Inactivation of 14-3-3 Influences Telomere Behavior and Ionizing Radiation-Induced Chromosomal Instability. Mol. Cell. Biol. 20: 7764-7772.

J.A. Douglas, M. Boehnke, E. Gillanders, J.M. Trent, S.B. Gruber (2001) Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies. Nature Genetics 28: 361-364.

B. Elenbaas, L. Spirio, F. Koerner, M.D. Fleming, D.B. Zimonjic, J.L. Donaher, N.C. Popescu, W.C. Hahn, R.A. Weinberg (2001). Human breast cancer cells generated by oncogenic transformation of primary mammary epithelial cells. Genes & Dev. 15: 50-65.

H. Elghezal, G. Le Guyader, I. Radford-Weiss, C. Perot, J. Van Den Akker, P. Eydoux, M. Vekemans, S.P. Romana (2001) Reassessment of childhood B-lineage lymphoblastic leukemia karyotypes using spectral analysis. Genes, Chromosomes and Cancer 30: 383-392.

I. Fadl-Elmula, S. Kytola, Y. Pan, W.O. Lui, G. Derienzo, L. Forsberg, N. Mandahl, L. Gorunova, U.S. Bergerheim, S. Heim, C. Larsson (2001) Characterization of chromosomal abnormalities in uroepithelial carcinomas by G-banding, spectral karyotyping and FISH analysis. Int J Cancer 92: 824-831.

FY. Fan, V.M. Siu (2001) Molecular cytogenetic characterization of a derivative chromosome 8 with an inverted duplication of 8p21.3-->p23.3 and a rearranged duplication of 8q24. Am J Med Genet. 102: 266-271.

Y.S. Fan, V.M. Siu, J.H. Jung, J. Xu (2000) Sensitivity of multiple color spectral karyotyping in detecting small interchromosomal rearrangements. Genetic Testing 4: 9-14.

E.W. Fleischman, S. Reshmi, O.I. Sokova, O.P. Kirichenko, L.N. Konstantinova, O.E. Kulagina, M.A. Frenkel, J.D. Rowley (1999) Increased karyotype precision using fluorescence in situ hybridization and spectral karyotyping in patients with myeloid malignancies. Cancer Genet. Cytogenet. 108: 166-70.

Y. Garini, A. Gil, I. Bar-Am, D. Cabib, N. Katzir (1999) Signal to noise analysis of multiple color fluorescence imaging microscopy. Cytometry 35: 214-220.

B.M. Ghadimi, D.L. Sackett, M.J. Difilippantonio, E. Schröck, T. Neumann, A. Jauho, G. Auer, T. Ried (2000) Centrosome amplification and instability occurs exclusively in aneuploid, but not in diploid colorectal cancer cell lines, and correlates with numerical chromosomal aberrations. Genes Chromosomes Cancer 27: 183-190.

B.M. Ghadimi, E. Schröck, R.L. Walker, D. Wangsa, A. Jauho, P.S. Meltzer, T. Ried (1999) Specific chromosomal aberrations and amplification of the AIB1 nuclear receptor coactivator gene in pancreatic carcinomas. Am. J. Pathol. 154: 525-36.

D. Gisselsson, L. Pettersson, M. Höglund, M. Heidenblad, L. Gorunova, J. Wiegant, F. Mertens, P.D. Cin, F. Mitelman, N. Mandahl (2000) Chromosomal breakage-fusion-bridge events cause genetic intratumor heterogeneity Proc. Natl. Acad. Sci. USA 97: 5357-5362.

S.G. Gray, S. Kytola, W.O. Lui, C. Larsson, T.J. Ekstrom (2000) Modulating IGFBP-3 expression by trichostatin A: potential therapeutic role in the treatment of hepatocellular carcinoma. Int. J. Mol. Med. 5: 33-41.

C.A. Griffin, A.L. Hawkins, C. Dvorak, C. Henkle, T. Ellingham, E.J. Perlman (1999) Recurrent involvement of 2p23 in inflammatory myofibroblastic tumors. Cancer Res. 59: 2776-2780.

B.R. Haddad, E. Schröck, J. Meck, J. Cowen, H. Young, M.A. Ferguson-Smith, S. du Manoir, T. Ried (1998) Identification of de novo chromosomal markers and derivatives by spectral karyotyping (SKY). Hum. Genet. 103: 619-25.

Hilgenfeld E, Padilla-Nash H, McNeil N, Knutsen T, Montagna C, Tchinda J, Horst J, Ludwig WD, Serve H, Buchner T, Berdel WE, Schrock E, Ried T. (2001) Spectral karyotyping and fluorescence in situ hybridization detect novel chromosomal aberrations, a recurring involvement of chromosome 21 and amplification of the MYC oncogene in acute myeloid leukaemia M2. Br J Haematol. 113: 305-317.

E. Hilgenfeld, H. Padilla-Nash, E. Schröck, T. Ried (1999) Analysis of B-cell neoplasias by spectral karyotyping. Curr. Top. Microbiol. Immunol. 246: 169-174.

B. Huang, Y. Ning, A.N. Lamb, C.J. Sandlin, M. Jamehdor, T. Ried, J. Bartley (1998) Identification of an unusual marker chromosome by spectral karyotyping. Am. J. Med. Genet. 80: 368-372.

K. Inokuchi, H. Hamaguchi, M. Taniwaki, H. Yamaguchi, S. Tanosaki, K. Dan (2001) Establishment of a cell line with AML1-MTG8, TP53, and TP73 abnormalities from acute myelogenous leukemia. Genes, Chromosomes and Cancer 32: 182-187.

Ishida F, Ueno M, Tanaka H, Makishima H, Suzawa K, Hosaka S, Hidaka E, Ishikawa M, Yamauchi K, Kitano K, Kiyosawa K. (2002) t(8;21;14)(q22;q22;q24) is a novel variant of t(8;21) with chimeric transcripts of AML1-ETO in acute myelogenous leukemia. Cancer Genet Cytogenet. 132: 133-135.

J.D. Jiang, Y. Wang, C.A. Janish, J.F. Holland, J.G. Bekesi (1998) 3-Bromoacetylamino benzoylurea (3-BAABU), a new antimicrotubule cancericidal agent applied in cytogenetic analysis in hematology. Biomed. Pharmacother. 52: 270-81.

D. Jones, M. Amin, N.G. Ordonez, A.B. Glassman, Hayes KJ, L.J. Medeiros (2001) Reticulum cell sarcoma of lymph node with mixed dendritic and fibroblastic features. Mod Pathol. 14: 1059-67.

S. Joyama, T. Ueda, K. Shimizu, I. Kudawara, M. Mano, H. Funai, K. Takemura, H. Yoshikawa (1999) Chromosome rearrangement at 17q25 and Xp11.2 in alveolar soft-part sarcoma: A case report and review of the literature. Cancer 86: 1246-1250.

Jyoko N, Kuroda J, Kimura S, Kobayashi Y, Yoshikawa T. (2002) Comprehensive cytogenetic study by spectral karyotyping on blastic natural killer cell leukemia/lymphoma. Am J Hematol. 69: 234-235.

N. Kakazu, E. Ashihara, S. Hada,T. Ueda, H. Sasaki, M. Terada, T. Abe See (2001) Development of spectral colour banding in cytogenetic analysis. Lancet 357: 529-530.

N. Kakazu, K. Kito, T. Hitomi, J. Oita, K. Nishida, K. Masuda, T. Miki, T. Abe (2000) Characterization of complex chromosomal abnormalities in B-cell lymphoma by a combined spectral karyotyping (SKY) analysis and fluorescence in situ hybridization (FISH) using a 14q telomere probe. Am J Hematol. 65: 291-297.

N. Kakazu, M. Taniwaki, S. Horiike, K. Nishida, T. Tatekawa, M. Nagai, T. Takahashi, T. Akaogi, J. Inazawa, M. Ohki, T. Abe (1999) Combined spectral karyotyping and DAPI banding analysis of chromosome abnormalities in myelodysplastic syndrome. Genes Chromosomes Cancer 26: 336-345.

N. Kakazu, T. Abe (1998) Cytogenetic analysis of chromosome abnormalities in human cancer using SKY. Experimental Medicine (Jikken Igaku) 16: 1638-1641.

H. Kanayama, W.O. Lui, M. Takahashi, T. Naroda, D. Kedra, F.K. Wong, Y. Kuroki, Y. Nakahori, C. Larsson, S. Kagawa, B.T. Teh (2001) Association of a novel constitutional translocation t(1q;3q) with familial renal cell carcinoma. J Med Genet.38: 165-170.

G.B. Kerndrup, E. Kjeldsen (2001) Acute leukemia cytogenetics. an evaluation of combining G-band karyotyping with multi-color spectral karyotyping. Cancer Genet Cytogenet. 124: 7-11.

Kimura S, Kakazu N, Kuroda J, Akaogi T, Hayashi H, Nishida K, Abe T. (2001) Agranular CD4+CD56+ blastic natural killer leukemia/lymphoma. Ann Hematol. 80: 228-231.

T. Knutsen, V.K. Rao, T. Ried, L. Mickley, E. Schneider, K. Miyake, B.M. Ghadimi, H. Padilla-Nash, S. Pack, L. Greenberger, K. Cowan, M. Dean, T. Fojo, S. Bates (2000) Amplification of 4q21-q22 and the MXR gene in independently derived mitoxantrone-resistant cell lines. Genes Chromosomes Cancer 27: 110-116.

N. Komae, Y. Hibino, N. Sugano (1999) Analysis of micronuclei induced under hyperthermic conditions in human lymphocyte culture by fluorescence in situ hybridization (FISH) and spectral karyotyping (SKY) methods. Yakugaku Zasshi 119: 763-772.

Krex D, Mohr B, Hauses M, Ehninger G, Schackert HK, Schackert G. (2001) Identification of uncommon chromosomal aberrations in the neuroglioma cell line H4 by spectral karyotyping. J Neurooncol. 52: 119-128.

H. Kubota, T, Nishizaki, K, Harada, K, Harada, A, Oga, H. Ito, M. Suzuki, K. Sasaki (2001) Identification of recurrent chromosomal rearrangements and the unique relationship between low-level amplification and translocation in glioblastoma. Genes, Chromosomes and Cancer 31: 125-133.

J. Kuroda, S. Kimura, T. Akaogi, H. Hayashi, K. Nishida, N. Kakazu, T. Abe (2000) Aggressive natural killer cell leukemia/lymphoma: a comprehensive cytogenetic study by spectral karyotyping. Ann. Hematol. 79: 519-522.

S. Kytölä, J. Rummukainen, A. Nordgren, R. Karhu, F. Farnebo, J. Isola, C. Larsson (2000) Chromosomal alterations in 15 breast cancer cell lines by comparative genomic hybridization and spectral karyotyping. Genes, Chromosomes and Cancer 28: 308-317.

N.T. Leach, C. Jackson-Cook (2001) The application of spectral karyotyping (SKY) and fluorescent in situ hybridization (FISH) technology to determine the chromosomal content(s) of micronuclei. Mutat Res. 495: 11-19.

D. Lev, O. Nakar, I. Bar-Am,A. Zudik, N. Watemberg, S. Finkelstien, N. Katzin, T. Lerman-Sagie (2000) CHARGE association in a child with de novo chromosomal aberration 46,X,der(X)t(X;2)(p22.1;q33) detected by spectral karyotyping. J Med Genet. 37: E47.

D. Lev, M. Yanoov, S. Weintraub, T. Lerman-Sagie (2000) Progressive neurological deterioration in a child with distal arthrogryposis and whistling face. J Med Genet 37: 231-233.

J. Liang, Y. Ning, R.-Y. Wang, H.M. Padilla-Nash, E. Schröck, D. Soenksen, L. Nagarajan, T. Ried (1999) Spectral karyotypic study of the HL-60 cell line: detection of complex rearrangements involving chromosomes 5, 7, and 16 and delineation of critical region of deletion on 5q31.1. Cancer Genet. Cytogenet. 113: 105-109.

W.-O. Lui, J. Wejde, E. Tani, O. Brosjö, S. Kytölä, C. Larsson (2001) A highly aggressive primitive mesenchymal tumor with a translocation (1;19)(q12;q13.2), Cancer Genetics and Cytogenetics 127: 128-133.

W.-O. Lui, S. Kytölä, L. Ånfalk, C. Larsson, L.-O. Farnebo (2000) Balanced translocation (3;7)(p25;q34): Another mechanism of tumorigenesis in follicular thyroid carcinoma? Cancer Genet Cytogenet. 119:109­112.

C. Luk, M. Tsao, J. Bayani, F. Shepherd, J.A. Squire (2001) Molecular cytogenetic analysis of non-small cell lung carcinoma by spectral karyotyping and comparative genomic hybridization. Cancer Genet Cytogenet. 125: 87-99.

R.A.F. MacLeod, W.G. Dirks, H.G. Drexler (2001) Persistent use of misidentified cell lines and its prevention. Genes, Chromosomes and Cancer 33: 103-104.

R.A. MacLeod, D. Spitzer, I. Bar-Am, J.E. Sylvester, M. Kaufmann, A. Wernich, H.G. Drexler (2000) Karyotypic dissection of Hodgkin's disease cell lines reveals ectopic subtelomeres and ribosomal DNA at sites of multiple jumping translocations and genomic amplification. Leukemia 14: 1803-1814.

M. Macville, E. Schröck, H. Padilla-Nash, C. Keck, B.M. Ghadini, D. Zimonjic, N. Popescu, T. Ried (1999) Comprehensive and definitive molecular cytogenetic characterization of HeLa cells by spectral karyotyping. Cancer Res. 59: 141-150.

H.F. Mark, Y. Gray, Y. Mark, J. Khorsand, W. Sikov (1999) A multimodal approach in the diagnosis of patients with hematopoietic disorders. Cancer Genet. Cytogenet. 109: 14-20.

J.A. Macoska, B. Beheshti, J.S. Rhim , B. Hukku, J. Lehr, K.J. Pienta, and J.A. Squire (2000) Genetic characterization of immortalized human prostate epithelial cell cultures: evidence for structural rearrangements of chromosome 8 and i(8q) chromosome formation in malignant-derived cells. Cytogenet. Cell Genet. 120: 50-57.

V.D. Markovic, D. Bouman, J. Bayani, J. Al-Maghrabi, S. Kamel-Reid & J.A. Squire (2000) Lack of BCR/ABL reciprocal fusion in variant Philadelphia chromosome translocations: a use of double fusion signal FISH and spectral karyotyping. Leukemia 14: 1157-1160.

C. Marquez, J. Cohen, S. Munne (1998) Chromosome identification in human oocytes and polar bodies by spectral karyotyping. Cytogenet. Cell Genet. 81: 254-258.

S. Mathew, P.H. Rao, J. Dalton, J.R. Downing, S.C. Raimondi (2001) Multicolor spectral karyotyping identifies novel translocations in childhood acute lymphoblastic leukemia. Leukemia 15: 468-472.

A Mégarbané, M.L. Lorc'h, H. Elghezal, G. Joly, P. Gosset, N. Souraty, L. Samaras, M. Prieur, M. Vekemans, C. Turleau, S.P. Romana (2001) Pure partial 7p trisomy including the TWIST, HOXA, and GLI3 genes. J Med Genet 38: 178-182.

Mehra S, Messner H, Minden M, Chaganti RS. (2002) Molecular cytogenetic characterization of non-Hodgkin lymphoma cell lines. Genes Chromosomes Cancer 33: 225-234.

R. Melcher, R. von Golitschek, C. Steinlein, D. Schindler, H. Neitzel, K. Kainer, M. Schmid, H. Hoehn (2000) Spectral karyotyping of Werner syndrome fibroblast cultures. Cytogenet Cell Genet. 91: 180-185.

R. Melcher, C. Steinlein, W. Feichtinger, C.R. Müller, T. Menzel, H. Lührs, W. Scheppach, M. Schmid (2000) Spectral karyotyping of the human colon cancer cell lines SW480 and SW620. Cytogenet. Cell Genet. 88: 145-152.

Mohr B, Bornhauser M, Platzbecker U, Freiberg-Richter J, Naumann R, Prange-Krex G, Mohm J, Kroschinsky F, Ehninger G, Thiede C. (2001) Problems with interphase fluorescence in situ hybridization in detecting BCR/ABL-positive cells in some patients using a novel technique with extra signals. Cancer Genet Cytogenet. 127: 111-117.

B Mohr, M Bornhäuser, C Thiede, U Schäkel, M Schaich, T Illmer, U Pascheberg & G Ehninger (2000) Comparison of spectral karyotyping and conventional cytogenetics in 39 patients with acute myeloid leukemia and myelodysplastic syndrome. Leukemia 14: 1031-1038.

S.H. Morelli, D.A. Deubler, L.J. Brothman, J.C. Carey, A.R. Brothman (1999) Partial trisomy 17p detected by spectral karyotyping. Clin Genet 55: 372-5.

K. Mrózek, M. Iliszko, J. Ry , M. Babi ska, A. Niezabitowski, C.D. Bloomfield, J. Limon (2001) Spectral karyotyping reveals 17;22 fusions in a cytogenetically atypical dermatofibrosarcoma protuberans with a large marker chromosome as a sole abnormality. Genes, Chromosomes and Cancer 31: 182-186.

Nanjangud G, Rao PH, Hegde A, Teruya-Feldstein J, Donnelly G, Qin J, Jhanwar SC, Zelenetz AD, Chaganti RS. (2002) Spectral karyotyping identifies new rearrangements, translocations, and clinical associations in diffuse large B-cell lymphoma. Blood 99: 2554-2561.

N.C. Naus, E. van Drunen, A. de Klein, G.P.M. Luyten, D.A. Paridaens, J.C. Alers, B.R. Ksander, H.B. Beverloo, R.M. Slater (2001) Characterization of complex chromosomal abnormalities in uveal melanoma by fluorescence in situ hybridization, spectral karyotyping, and comparative genomic hybridization. Genes, Chromosomes and Cancer 30: 267-273.

M.H. Ng, N. Wong, K.S. Tsang, S.H. Cheng, Y.F. Chung, K.W. Lo (2001) Recurrent chromosomal rearrangements involving breakpoints 3p21 and 19q13 in Chinese IgD multiple myeloma detected by G-banding and multicolor spectral karyotyping: A review of IgD karyotype literature. Hum Pathol. 32: 1016-1020.

Y. Ning, C.H. Laundon, E. Schröck, P. Buchanan, T. Ried (1999) Prenatal diagnosis of a mosaic extra structurally abnormal chromosome by spectral karyotyping. Prenat. Diagn. 19: 480-482.

Y. Ning, L. Nagarajan, E. Schröck, T. Ried (1998) Characterization of chromosome 5q deletions by subtelomeric probes and spectral karyotyping. Cancer Genet. Cytogenet. 103: 170-172.

A. Nordgren, J. Schoumans, S. Soderhall, M. Nordenskjold, E. Blennow (2001) Interphase fluorescence in situ hybridization and spectral karyotyping reveals hidden genetic aberrations in children with acute lymphoblastic leukaemia and a normal banded karyotype. Br J Haematol. 114: 786-793.

Nordgren A, Farnebo F, Johansson B, Holmgren G, Forestier E, Larsson C, Soderhall S, Nordenskjold M, Blennow E. (2001) Identification of numerical and structural chromosome aberrations in 15 high hyperdiploid childhood acute lymphoblastic leukemias using spectral karyotyping. Eur J Haematol. 66: 297-304.

A. Nordgren, F. Farnebo, M. Bjorkholm, S. Sahlen, A. Porwit-MacDonald, E. Osby, S. Kytola, C. Larsson, M. Nordenskjold, E. Blennow (2000) Detailed characterization of a complex karyotype in a patient with primary plasma cell leukaemia using multicolour spectral karyotyping and micro-FISH. The Hematology Journal1: 95-101.

A. Nordgren, A.G. Sorensen, N. Tinggaard-Pedersen, E. Blennow, C. Larsson, S. Lagercrantz (2000) New chromosomal breakpoints in non-Hodgkin's lymphomas revealed by spectral karyotyping and G-banding. Int J Mol Med 5: 485-492.

Numabe H, Yamada N, Ogihara M, Hoshika A. (2001) [A case of 7q distal trisomy syndrome associated with West syndrome]. No To Hattatsu 33: 437-441.

Odero MD, Carlson KM, Calasanz MJ, Rowley JD (2001) Further characterization of complex chromosomal rearrangements in myeloid malignancies: spectral karyotyping adds precision in defining abnormalities associated with poor prognosis. Leukemia. 15: 1133-1136.

M.D. Odero, K. Carlson, M.J. Calasanz, I. Lahortiga, V. Chinwalla, J.D. Rowley (2001) Identification of new translocations involving ETV6 in hematologic malignancies by fluorescence in situ hybridization and spectral karyotyping. Genes, Chromosomes and Cancer 31: 134-142.

M.R. Odero, N.J. Zeleznik-Le, V. Chinwalla, J.D. Rowley (2000) Cytogenetic and molecular analysis of the acute monocytic leukemia cell line THP-1 with an MLL-AF9 translocation. Genes, Chromosomes & Cancer 29: 333-338.

D.P. O'Malley, K.E. Opheim, T.S. Barry, D.B. Chapman, M.J. Emond, E.U. Conrad, T.H. Norwood (2001) Chromosomal changes in a dedifferentiated chondrosarcoma. a case report and review of the literature. Cancer Genet Cytogenet. 124: 105-111.

H. Ouyang, L.-j. Mou, C. Luk, N. Liu, J. Karaskova, J. Squire, M.-S. Tsao (2000) Immortal human pancreatic duct epithelial cell lines with near normal genotype and phenotype. Am J Pathol 157: 1623-1631.

H. M. Padilla-Nash, K. Heselmeyer-Haddad, D. Wangsa, H. Zhang, B.M. Ghadimi, M. Macville, M. Augustus, E. Schröck, E. Hilgenfeld, T. Ried (2001) Jumping translocations are common in solid tumor cell lines and result in recurrent fusions of whole chromosome arms. Genes, Chromosomes and Cancer 30: 349-363.

H.M. Padilla-Nash, W.G. Nash, K.M. Roberson, C.N. Robertson, M. Macville, E. Schröck, T. Ried (1999) Molecular cytogenetic analysis of the bladder carcinoma cell line BK-10 by spectral karyotyping. Genes, Chromosomes & Cancer 25: 53-59.

Y. Pan, W.-O. Lui, N. Nupponen, C. Larsson, J. Isola , T. Visakorpi, U.S.R. Bergerheim, S. Kytölä (2001) 5q11, 8p11, and 10q22 are recurrent chromosomal breakpoints in prostate cancer cell lines. Genes, Chromosomes & Cancer 30:187-195.

Y. Pan, S. Kytola, F. Farnebo, N. Wang, W.O. Lui, N. Nupponen, J. Isola, T. Visakorpi, U.S. Bergerheim, C. Larsson (1999) Characterization of chromosomal abnormalities in prostate cancer cell lines by spectral karyotyping. Cytogenet Cell Genet. 87: 225-232.

A. Pandita, M. Zielenska, P. Thorner, J. Bayani, R. Godbout, M. Greenberg, J.A. Squire (1999) Application of comparative genomic hybridization, spectral karyotyping and microarray analysis in the identification of subtype-specific patterns of genomic changes in Rhabdomyosarcoma. Neoplasia 1: 262-275.

Pang E, Wong N, Lai PB, To KF, Lau WY, Johnson PJ. (2002) Consistent chromosome 10 rearrangements in four newly established human hepatocellular carcinoma cell lines. Genes Chromosomes Cancer 33: 150-159.

Pang E, Wong N, Lai PB, To K, Lau JW, Johnson PJ (2000) A comprehensive karyotypic analysis on a newly developed hepatocellular carcinoma cell line, HKCI-1, by spectral karyotyping and comparative genomic hybridization. Cancer Genet Cytogenet. 121: 9-16.

B. Peschka, J. Leygraaf, D. Hansmann, M. Hansmann, E. Schröck, T. Ried, H. Engels, G. Schwanitz, R. Schubert (1999) Analysis of a de novo complex chromosome rearrangement involving chromosomes 4, 11, 12 and 13 and eight breakpoints by conventional cytogenetic, fluorescence in situ hybridization and spectral karyotyping. Prenat Diagn 19: 1143-1149.

M.C. Phelan, W. Blackburn, R.C. Rogers, E.C. Crawford, H.R. Cooley Jr., E. Schröck, Y. Ning, T. Ried (1998) FISH analysis of a complex chromosome rearrangement involving nine breakpoints on chromosomes 6, 12, 14 and 16. Prenat. Diagn. 18: 1174-80.

J.L. Phillips, B.M. Ghadimi, D. Wangsa, H. Padilla-Nash, R. Worrell, S. Hewitt, M. Walther, W.M. Linehan, R.D. Klausner, T. Ried (2001) Molecular cytogenetic characterization of early and late renal cell carcinomas in Von Hippel-Lindau disease. Genes, Chromosomes and Cancer 31: 1-9.

Rao PH, Harris CP, Yan Lu X, Li XN, Mok SC, Lau CC. (2002) Multicolor spectral karyotyping of serous ovarian adenocarcinoma. Genes Chromosomes Cancer 33: 123-132.

P.H. Rao, J.C. Cigudosa, Y. Ning, M.J. Calasanz, S. Iida, S. Tagawa, J. Michaeli, B. Klein, R. Dalla-Favera, S.C. Jhanwar, T. Ried, R.S. Chaganti (1998) Multicolor spectral karyotyping identifies new recurring breakpoints and translocations in multiple myeloma. Blood 92: 1743-1748.

K.S. Reddy, V. Sulcova, H. Young, J.K. Blancato, B.R. Haddad (1999) De novo mosaic add(3) characterized to be trisomy 14q31-qter using spectral karyotyping and subtelomeric probes. Am J Med Genet. 82: 318-21.

K. Rennstam, B. Baldetorp, S. Kytölä, M. Tanner, J. Isola (2001) Chromosomal rearrangements and oncogene amplification precede aneuploidization in the genetic evolution of breast cancer. Cancer Res. 61: 1214-1219.

I. Roberts, J. Wienberg, E. Nacheva, C. Grace, D. Griffin, N. Coleman (1999) Novel method for the production of multiple colour chromosome paints for use in karyotyping by fluorescence in situ hybridisation. Genes Chromosomes Cancer 25: 241-50.

S.R. Rogatto, C.A. Rainho, Z.M. Zhang, F. Figueredo, J. Barbieri-Neto, S.M. Georgetto, J.A. Squire (1999) Hemangioendothelioma of bone in a patient with a constitutional supernumerary marker. Cancer Genet. Cytogenet. 110: 23-27.

B. Röthlisberger, D. Kotzot, L. Brecevic, M. Koehler, D. Balmer, F. Binkert, A. Schinzel (1999) Recombinant balanced and unbalanced translocations as a consequence of a balanced complex chromosomal rearrangement involving eight breakpoints in four chromosomes. Eur. J. Hum. Genet. 7: 873-883.

J.D. Rowley, S. Reshmi, K. Carlson, D. Roulston (1999) Spectral karyotype analysis of T-cell acute leukemia. Blood 93: 2038-2042.

J. Rummukainen, S. Kytölä, R. Karhu, F. Farnebo, C. Larsson, J.J. Isola (2001) Aberrations of chromosome 8 in 16 breast cancer cell lines by comparative genomic hybridization, fluorescence in situ hybridization, and spectral karyotyping. Cancer Genetics and Cytogenetics126: 1-7.

A. Safar, M. Nelson, J.R. Neff, G.E. Maale, J. Bayani, J. Squire, J.A. Bridge (2000) Recurrent anomalies of 6q25 in chondromyxoid fibroma. Hum Pathol. 31: 306-311.

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L.M. Sargent, M.A. Nelson, D.T. Lowry, J.R. Senft, A.M. Jefferson, M.E. Ariza, S.H. Reynolds (2001) Detection of three novel translocations and specific common chromosomal break sites in malignant melanoma by spectral karyotyping. Genes, Chromosomes Cancer 32: 18-25.

T. Satoh, K. Yamamoto, K.F. Miura, M. Ishidato, Jr. (1998) Cytogenetic analysis of heteromorphic short arm of 15p+ in a human diploid cell strain, TIG-7. Chromosome Science 2: 57-62.

W.S. Saunders, M. Shuster, X. Huang, B. Gharaibeh, A.H. Enyenihi, I. Petersen, S.M. Gollin (2000) Chromosomal instability and cytoskeletal defects in oral cancer cells. Proc. Natl. Acad. Sci. USA 97: 303-308.

J.R. Sawyer, R.L. Binz, J.C. Gilliland, R.W. Nicholas, J.R. Thomas (2001) A novel reciprocal (10;17)(p11.2;q23) in myxoid fibrosarcoma. Cancer Genet. Cytogenet. 124: 144-146.

J.R. Sawyer, J.L. Lukacs, E.L. Thomas, C.M. Swanson, L.S. Goosen, G. Sammartino, J.C. Gilliland, N.C. Munshi, G. Tricot, J.D. Shaughnessy, B. Barlogie (2001) Multicolour spectral karyotyping identifies new translocations and a recurring pathway for chromosome loss in multiple myeloma. Br J Haematol. 112: 167-174.

J.R. Sawyer, J.L. Lukacs, N. Munshi, K.R. Desikan, S. Singhal, J. Mehta, D. Siegel, J. Shaughnessy, B. Barlogie (1998) Identification of new nonrandom translocations in multiple myeloma with multicolor spectral karyotyping. Blood 92: 4269-4278.

E. Schröck, T. Veldman, H. Padilla-Nash, Y. Ning, J. Spurbeck, S. Jalal, L.G. Schaffer, P. Papenhausen, C. Kozma, M.C. Phelan, E. Kjeldsen, S.A. Schonberg, L. Biesecker, S. du Manoir, T. Ried, T. (1997) Spectral karyotyping refines cytogenetic diagnostics of constitutional chromosomal abnormalities. Hum. Genet. 101: 255-262.

E. Schröck, S. du Manoir, T. Veldman, B. Schoell, J. Weinberg, M.A. Ferguson-Smith, Y. Ning, D.H. Ledbetter, I. Bar-Am, D. Soenksen, Y. Garini, T. Ried (1996) Multicolor spectral karyotyping of human chromosomes. Science 273: 494-497.

V.L. Seewaldt, K. Mrózek, E.C. Dietze, M. Parker, L.E. Caldwell (2001) Human papillomavirus Type 16 E6 inactivation of p53 in normal human mammary epithelial cells promotes tamoxifen-mediated apoptosis. Cancer Res. 61: 616-624.

J. Shaughnessy Jr., E. Tian, J. Sawyer, K. Bumm, R. Landes, A. Badros, C. Morris, G. Tricot, J. Epstein, B. Barlogie (2000) High incidence of chromosome 13 deletion in multiple myeloma detected by multiprobe interphase FISH. Blood 96: 1505-1511.

Y. Shou, M.L. Martelli, A. Gabrea, Y. Qi, L.A. Brents, A. Roschke, G. Dewald, I.R. Kirsch, P. L. Bergsagel, W.M. Kuehl (2000) Diverse karyotypic abnormalities of the c-myc locus associated with c-myc dysregulation and tumor progression in multiple myeloma. Proc. Natl. Acad. Sci. USA 97: 228-233.

J. Simons, I. Teshima, M. Zielenska, V. Edwards, G. Taylor, J. Squire, P. Thorner (1999) Analysis of chromosome 22q as an aid to the diagnosis of rhabdoid tumor: a case report. Am. J. Surg. Pathol. 23: 982-8.

B. Singh, S. Gogineni, A. Goberdhan, P. Sacks, J. Shaha A, Shah, P. Rao (2001) Spectral karyotyping analysis of head and neck squamous cell carcinoma. Laryngoscope 111: 1545-1550. PMID: 11568603.

B. Singh, S.K. Gogineni, P.G. Sacks, A.R. Shaha, J.P. Shah, A. Stoffel, P.H. Rao (2001) Molecular cytogenetic characterization of head and neck squamous cell carcinoma and refinement of 3q amplification. Cancer Res. 61: 4506-4513.

V. Sirivatanauksorn, Y. Sirivatanauksorn, P.A. Gorman, J.M. Davidson, D. Sheer, P.S. Moore, A. Scarpa, P.A. Edwards, N.R. Lemoine (2001) Non-random chromosomal rearrangements in pancreatic cancer cell lines identified by spectral karyotyping. Int J Cancer. 91: 350-358.

H. Sjögren, B. Wedell, J.M.M. Kindblom, L.-G. Kindblom, G. Stenman (2000) Fusion of the NH2-terminal domain of the basic helix-loop-helix protein TCF12 to TEC in extraskeletal myxoid chondrosarcoma with translocation t(9;15)(q22;q21). Cancer Res. 60: 6832-6835.

H. Sjogren, O. Nilsson, M. Behrendt, L. Kolby, A.M. Jacobsen Levin, H. Ahlman, G. Stenman (2000) Multicolor spectral karyotype analysis of a transplantable human ileal carcinoid. Int. J. Mol. Med. 6: 629-633.

J.A. Squire, S. Arab, P. Marrano, J. Bayani, J. Karaskova, M. Taylor, L. Becker, J. Rutka, M. Zielenska (2001) Molecular cytogenetic analysis of glial tumors using spectral karyotyping and comparative genomic hybridization. Mol Diagn. 6: 93-108.

Batia Stark, Marta Jeison, Rima Gobuzov, Hagit Krug, Leticia Glaser-Gabay, Drorit Luria, Ronit El-Hasid, Miriam Ben Harush, Gali Avrahami, Salvador Fisher, Jerry Stein, Rina Zaizov and Isaac Yaniv (2001) Near haploid childhood acute lymphoblastic leukemia masked by hyperdiploid line; detection by fluorescence in situ hybridization. Cancer Genet. Cytogenet. 128: 108-113.

B. Stark, M. Jeison, R. Gobuzov, S. Finkelshtein, S. Ash, G. Avrahami, I.J. Cohen, J. Stein, I. Yaniv, R. Zaizov, I. Bar-Am (2000) Apparently unrelated clones shown by spectral karyotyping to represent clonal evolution of cryptic t(10;11)(p13;q23) in a patient with acute monoblastic leukemia. Cancer Genet Cytogenet. 120: 105-110.

M. Subramaniam, S. Jalal, S. Harris, M. Bolander, and T. C. Spelsberg (manuscript in preparation, 2001) Comparison of chromosomal alterations in normal and transformed human osteoblasts using multicolor spectral karyotyping, cited by G.G. Reinholz et al 2000 Cancer Res. 60-6001-6007.

Y. Takebayashi, P. Pourquier, D.B. Zimonjic, K. Nakayama, S. Emmert, T. Ueda, Y. Urasaki, A. Kanzaki, S.-I. Akiyama, N. Popescu, K.H. Kraemer (2001) Antiproliferative activity of ecteinascidin 743 is dependent upon transcription-coupled nucleotide-excision repair. Nature Medicine 7: 961-966.

A. Tamura, I. Miura, S. Iida, S. Yokota, S. Horiike, K. Nishida, H. Fujii, S. Nakamura, M. Seto, R. Ueda, M. Taniwaki (2001) Interphase detection of immunoglobulin heavy chain gene translocations with specific oncogene loci in 173 patients with B-cell lymphoma. Cancer Genetics and Cytogenetics 129: 1-9.

Tanemura M, Suzumori K, Nishikawa N, Ishihara Y. (2001) Multicolour spectral karyotyping for complex chromosomal rearrangements in repeated abortion or congenital anomalies. Prenat Diagn. 21: 1123-1128.

Tchinda J, Volpert S, Neumann T, Kennerknecht I, Ritter J, Buchner T, Berdel WE, Horst J. (2002) Novel der(1)t(1;19) in two patients with myeloid neoplasias. Cancer Genet Cytogenet. 133: 61-65.

Tekin M, Jackson-Cook C, Pandya A. (2001) De novo inverted tandem duplication of the short arm of chromosome 12 in a patient with microblepharon. Am J Med Genet. 104: 42-46.

G. Tonon, A. Roschke, K. Stover, Y. Shou, W.M. Kuehl, I.R. Kirsch (2000) Spectral karyotyping combined with locus-specific FISH simultaneously defines genes and chromosomes involved in chromosomal translocations. Genes Chromosomes Cancer 2000 27: 418-423.

L. Trakhtenbrot, N. Cohen, E. Rosner, N. Gipsh, F. Brok-Simoni, M. Mandel, N. Amariglio, G. Rechavi (1999) Coexistence of several unbalanced translocations in a case of neuroblastoma: The contribution of multicolor spectral karyotyping. Cancer Genet. Cytogenet. 112: 119-123.

T. Tsushimi, S. Noshima, A. Oga, K. Esato, K. Sasaki (2001) DNA amplification and chromosomal translocations are accompanied by chromosomal instability: analysis of seven human colon cancer cell lines by comparative genomic hybridization and spectral karyotyping. Cancer Genet. Cytogenet.126: 34-38.

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H. Vaziri, J.A. Squire, T.K. Pandita, G. Bradley, R.M. Kuba, H. Zhang, S. Gulyas, R.P. Hill, G.P. Nolan, S. Benchimol (1999) Analysis of genomic integrity and p53-dependent G1 checkpoint in telomerase-induced extended-life-span human fibroblasts. Mol. Cell Biol. 19: 2373-2379.

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T. Wakayama, Y. Maniwa, H. Ago, N. Kakazu, T. Abe (2001) A variant form of myelodysplastic syndrome with Ph- minor-BCR/ABL transcript. Int J Hematol. 74: 58-63.

T.S. Wan, S.K. Ma, S.F. Yip, Y.M. Yeung, L.C. Chan (2000) Molecular characterization of der(15)t(11;15) as a secondary cytogenetic abnormality in acute promyelocytic leukemia with cryptic PML-RARalpha fusion on 17q. Cancer Genet Cytogenet 121: 90-93.

T.S. Wan, S.K. Ma, G.C. Chan, L.M. Ching, S.Y. Ha, L.C. Chan (2000) Complex cytogenetic abnormalities in T-lymphoblastic lymphoma. resolution by spectral karyotyping. Cancer Genet Cytogenet.118: 24-27.

A. Watanabe, K. Koike, T. Fukushima, I. Izumi, K. Ohba, M. Tsuchida (2001) [Complex translocation (8;15;21) (q22;p12;q22) in a child with AML-M2 showing de novo appearance of the short form of AML1-MTG8 chimeric mRNA during the course]. Rinsho Ketsueki 42: 110-114.

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S.P. Whitman, M.P. Strout, G. Marcucci, A.G. Freud, L.L. Culley, N.J. Zeleznik-Le, K. Mrózek, K.S. Theil, U.R. Kees, C.D. Bloomfield, M.A. Caligiuri (2001) The partial nontandem duplication of the MLL (ALL1) gene is a novel rearrangement that generates three distinct fusion transcripts in B-Cell acute lymphoblastic leukemia. Cancer Res. 61: 59-63.

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K.F. Wong, C.C. So, N. Wong, L.L. Siu, Y.L. Kwong, J.K. Chan (2001) Sinonasal angiosarcoma with marrow involvement at presentation mimicking malignant lymphoma. cytogenetic analysis using multiple techniques.
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Wong N, Lam WC, Lai PB, Pang E, Lau WY, Johnson PJ. Hypomethylation of Chromosome 1 Heterochromatin DNA Correlates with q-Arm Copy Gain in Human Hepatocellular Carcinoma. Am J Pathol. 2001 Aug;159(2):465-71.

N. Wong, P. Lai, E. Pang, T.W.-T. Leung, J.W.-Y. Lau, P.J. Johnson (2000) A comprehensive karyotypic study on human hepatocellular carcinoma by spectral karyotyping. Hepatology 32: 1060-1068.

N. Wong, K.F. Wong, J.K. Chan, P.J. Johnson (2000) Chromosomal translocations are common in natural killer-cell lymphoma/leukemia as shown by spectral karyotyping. Hum. Pathol. 31: 771-774.

C.H. Wouters, H.J. Meijers-Heijboer, B.J. Eussen, A.A. van Der Heide, R.B. van Luijk, E. van Drunen, B.B. Beverloo, F. Visscher, J.O. Van Hemel (2001) Deletions at chromosome regions 7q11.23 and 7q36 in a patient with Williams syndrome. Am J Med Genet. 102: 261-265.

Yamamoto K, Nagata K, Kida A, Hamaguchi H. (2001) Deletion of 16q11 is a recurrent cytogenetic aberration in acute myeloblastic leukemia during disease progression. Cancer Genet Cytogenet. 131: 65-68.

Yamamoto K, Nakamura Y, Arai H, Aoyagi M, Saito K, Furusawa S, Mitani K. (2001) Translocation (14;19)(q32;q13) detected by spectral karyotyping and lack of BCL3 rearrangement in CD5-positive B-cell lymphoma associated with hemophagocytic syndrome. Cancer Genet Cytogenet.130: 38-41.

Ye CJ, Lu W, Liu G, Bremer SW, Wang YA, Moens P, Hughes M, Krawetz SA, Heng HH. (2001) The combination of SKY and specific loci detection with FISH or immunostaining. Cytogenet Cell Genet. 93: 195-202.

Y.A. Yeh, P.H. Rao, C.T. Cigna, W. Middlesworth, J.H. Lefkowitch, W. Murty (2000) Trisomy 1q, 2, and 20 in a case of hepatoblastoma. Possible significance of 2q35-q37 and 1q12-q21 rearrangements. Cancer Genet Cytogenet. 123: 140-143.

H. Zattara-Cannoni, P. Roll, D. Figarella-Branger, G. Lena, H. Dufour, F. Grisoli,A.-M. Vagner-Capodano (2001) Cytogenetic study of six cases of radiation-induced meningiomas. Cancer Genetics and Cytogenetics 126: 81-84.

H. Zattara-Cannoni, H. Dufour, H. Lepidi, C. Chatel, F. Grisoli, A.M. Vagner-Capodano (1998) Hidden chromosome abnormalities in a primary central nervous system lymphoma detected by multicolor spectral karyotyping. Cancer Genet. Cytogenet. 107: 98-101.

A. Zhang, C. Zheng, C. Lindvall, M. Hou, J. Ekedahl, R. Lewensohn, Z. Yan, X. Yang, M. Henriksson, E. Blennow, M. Nordenskjöld, A. Zetterberg, M. Björkholm, A. Gruber, D. Xu (2000) Frequent amplification of the telomerase reverse transcriptase gene in human tumors. Cancer Res. 60: 6230-6235.

F.F. Zhang, J.L. Murata-Collins, P. Gaytan, S.J. Forman, K.J. Kopecky, C.L. Willman, F.R. Appelbaum, M.L. Slovak (2000) Twenty-four-color spectral karyotyping reveals chromosome aberrations in cytogenetically normal acute myeloid leukemia. Genes, Chromosomes and Cancer 28: 318-328.

L. Zhao, K. Hayes, Z. Khan, A. Glassman (2001) Spectral karyotyping study of chromosome abnormalities in human leukemia. Cancer Genet Cytogenet. 127: 143-147.

Zielenska M, Bayani J, Pandita A, Toledo S, Marrano P, Andrade J, Petrilli A, Thorner P, Sorensen P, Squire JA. (2001) Comparative genomic hybridization analysis identifies gains of 1p35 approximately p36 and chromosome 19 in osteosarcoma. Cancer Genet Cytogenet. 130: 14-21.

M. Zielenska, Z.M. Zhang, K. Ng, P. Marrano, J. Bayani, O.C. Ramirez, P. Sorensen, P. Thorner, M. Greenberg, J.A. Squire (2001) Acquisition of secondary structural chromosomal changes in pediatric Ewing sarcoma is a probable prognostic factor for tumor response and clinical outcome. Cancer 91: 2156-2164.

D.B. Zimonjic, C. Keck-Waggoner, N.C. Popescu (2001) Novel genomic imbalances and chromosome translocations involving c-myc gene in Burkitt's lymphoma. Leukemia 15: 1582-1588.

H. Zitzelsberger, J. Bruch, J. Smida, L. Hieber, C.M. Peddie, P.E. Bryant, A.C. Riches, J. Fung, H.-U.G. Weier, M. Bauchinger (2001) Clonal chromosomal aberrations in simian virus 40-transfected human thyroid cells and in derived tumors developed after in vitro irradiation. Int J Cancer 96: 166-177.

H. Zitzelsberger, L. Lehmann, L. Hieber, H.U.G. Weier, C. Janish, J. Fung, T. Negele, F. Spelsberg, E. Lengfelder, E.P. Demidchik, K. Salassidis, A.M. Kellerer, M. Werner, and M. Bauchinger (1999) Cytogenetic changes in radiation-induced tumors of the thyroid. Cancer Res. 59: 135-140.

H. Zitzelsberger, J. Fung, C. Janish, G. McNamara, P.E. Bryant, A.C. Riches, H.U.G. Weier (1999) Spectral karyotyping (SKY) analysis of heritable effects of radiation-induced malignant transformation. SPIE Proc. 3605: 325-331.

Mouse Spectral Karyotyping

D.M. Allen, H. van Praag, J. Ray, Z. Weaver, C.J. Winrow, T.A. Carter, R. Braquet, E. Harrington, T. Ried, K.D. Brown, F.H. Gage, C. Barlow (2001) Ataxia telangiectasia mutated is essential during adult neurogenesis.
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A.E. Coleman, T. Ried, S. Janz (2000) Chromosomes 1 and 5 harbor plasmacytoma progressor genes in mice. Genes, Chromosomes and Cancer 29: 70-74.

A. Coleman, S. Forest, N. McNeil, A. Kovalchuk, T. Ried, S. Janz (1999) Cytogenetic analysis of the bipotential murine pre-B cell lymphoma, P388, and its derivative macrophage-like tumor, P388D1, using SKY and CGH. Leukemia 13: 1592-1600.

A.E. Coleman, A.L. Kovalchuk, S. Janz, A. Palini, T. Ried (1999) Jumping translocation breakpoint regions lead to amplification of rearranged Myc. Blood 93: 4442-4444.

A.E. Coleman, T. Ried, S. Janz (1999) Recurrent non-reciprocal translocations of chromosome 5 in primary T(12;15)-positive BALB/c plasmacytomas. Curr. Top. Microbiol. Immunol. 246: 1751-80; discussion 181.

A.E. Coleman, E. Schröck, Z. Weaver, S. du Manoir, F. Yang, M.A. Ferguson-Smith, T. Ried, S. Janz (1997) Previously hidden chromosome aberrations in T(12;15)-positive BALB/c plasmacytomas uncovered by multicolor spectral karyotyping. Cancer. Res. 57: 4585-4592.

L. Diaw, D. Siwarski, A. Coleman, J. Kim, G.M. Jones, G. Dighiero, K. Huppi (2000) Restricted immunoglobulin variable region (Ig V) gene expression accompanies secondary rearrangements of light chain Ig V genes in mouse plasmacytomas. J. Exp. Med. 190: 1405-1415.

M.J. Difilippantonio, J. Zhu, H. Tang Chen, E. Meffre, N.C. Nussenzweig, E.E. Max, T. Ried, A. Nussenzweig (2000) DNA repair protein Ku80 suppresses chromosomal aberrations and malignant transformation. Nature 404: 510-514.

H. Ding, L. Roncari, P. Shannon, X. Wu, N. Lau, J. Karaskova, D.H. Gutmann, J.A. Squire, A. Nagy, A. Guha (2001) Astrocyte-specific expression of activated p21-ras results in malignant astrocytoma formation in a transgenic mouse model of human gliomas. Cancer Res 61: 3826-3836.

D. Dozortsev, A. Coleman, P. Nagy, M.P. Diamond, A. Ermilov, U. Weier, M. Liyanage, T. Reid (2000) Nucleoli in a pronuclei-stage mouse embryo are represented by major satellite DNA of interconnecting chromosomes. Fertil Steril 73: 366-371.

K. Felix, A.L. Kovalchuk, S.S. Park, A.E. Coleman, E.S. Ramsay, M. Qian, K.A. Kelliher, G.M. Jones, T. Ried, G.W. Bornkamm, S. Janz (2001) Inducible mutagenesis in TEPC 2372, a mouse plasmacytoma cell line that harbors the transgenic shuttle vector lambdaLIZ. Mutat Res. 473: 121-136.

D.O. Ferguson, J.M. Sekiguchi, S. Chang, K.M. Frank, Y. Gao, R.A. DePinho, F.W. Alt (2000) The nonhomologous end-joining pathway of DNA repair is required for genomic stability and the suppression of translocations. Proc Natl Acad Sci USA 97: 6630-6633.

Y. Gao, D.O. Ferguson, W. Xie, J.P. Manis, J. Sekiguchi, K. M. Frank, J. Chaudhuri, J. Horner, R.A. DePinho, F.W. Alt (2000) Interplay of p53 and DNA-repair protein XRCC4 in tumorigenesis, genomic stability and development Nature 404: 897-900.

T. Hardt, H. Himmelbauer, W. Mann, H. Ropers, T. Haaf (1999) Towards identification of individual homologous chromosomes: comparative genomic hybridization and spectral karyotyping discriminate between paternal and maternal euchromatin in Mus musculus x M. spretus interspecific hybrids. Cytogenet. Cell Genet. 86: 187-193.

M.T. Hemann, M.A. Strong, L.Y. Hao, C.W. Greider (2001) The shortest telomere, not average telomere length, is critical for cell viability and chromosome stability. Cell 107: 67-77.

H.H. Heng, G. Liu, W. Lu, S. Bremer, C.J. Ye, M. Hughes, P. Moens (2001) Spectral karyotyping (SKY) of mouse meiotic chromosomes. Genome 44: 293-298.

A.L. Kovalchuk, A. E., A.E. Coleman, S.S. Park, T. Ried, C.C. Cremer, S. Janz (2001) Translocation remodeling in the primary BALB/c plasmacytoma TEPC 3610. Genes, Chromosomes and Cancer 30: 283-291.

G. Liu, W. Lu, S. Bremer, H. Hameister, B. Schreiner, M. Hughes, H.H. Heng (2000) Spectral karyotyping of mouse cell line WMP2. Cytogenet. Cell Genet. 90: 271-274.

M. Liyanage, Z. Weaver, C. Barlow, A. Coleman, D.G. Pankratz, S. Anderson, A. Wynshaw-Boris, T. Ried (2000) Abnormal rearrangement within the alpha/delta T-cell receptor locus in lymphomas from Atm-deficient mice.
Blood. 96: 1940-1946.

M. Liyanage, A. Coleman, S. du Manoir, T. Veldman, S. McCormack, R.B. Dickson, C. Barlow, A. Wynshaw-Boris, S. Janz, J. Wienberg, M.A. Ferguson-Smith, E. Schröck, T. Ried (1996) Multicolour spectral karyotyping of mouse chromosomes. Nature Genetics 14: 312-315.

S. McCormack, Z. Weaver, S. Deming, G. Natarajan, J. Torri, M. Liyanage, M.D. Johnson, T. Ried, R.B. Dickson (1998) Myc/p53 interactions in transgenic mouse mammary development, tumorigenesis, and chromosomal instability. Oncogene 16: 2755-2766.

Montagna C, Andrechek ER, Padilla-Nash H, Muller WJ, Ried T. (2002) Centrosome abnormalities, recurring deletions of chromosome 4, and genomic amplification of HER2/neu define mouse mammary gland adenocarcinomas induced by mutant HER2/neu. Oncogene 21: 890-898.

L.K. Petiniot, Z. Weaver, C. Barlow, R. Shen, M Eckhaus, S.M. Steinberg, T. Ried, A. Wynshaw-Boris, R.J. Hodes (2000) Recombinase-activating gene (RAG) 2-mediated V(D)J recombination is not essential for tumorigenesis in Atm-deficient mice. Proc. Natl. Acad. Sci. USA 97: 6664-6669.

C.-F. Qi, M. Hori, A.E. Coleman, T.A. Torrey, L. Taddesse-Heath, B.H. Ye, S.K. Chattopadhyay, J.W. Hartley, H.C. Morse III (2000) Genomic organisation and expression of BCL6 in murine B-cell lymphomas. Leukemia Res. 24: 719-732.

Samper E, Goytisolo FA, Murcia JM, Gonzalez-Suarez E, Cigudosa JC, de Murcia G, Blasco MA. (2001) Normal telomere length and chromosomal end capping in poly(ADP-ribose) polymerase-deficient mice and primary cells despite increased chromosomal instability. J Cell Biol 154: 49-60.

S.X. Shen, Z. Weaver, X. Xu, C. Li, M. Weinstein, L. Chen, X.Y. Guan, T. Ried, C.X. Deng (1998) A targeted disruption of the murine Brca1 gene causes gamma-irradiation hypersensitivity and genetic instability. Oncogene 17: 3115-24.

Z.A. Weaver, S.J. McCormack, M. Liyanage, S. du Manoir, A. Coleman, E. Schröck, R.B. Dickson, T. Ried (1999) A recurring pattern of chromosomal aberrations in mammary gland tumors of MMTV-cmyc transgenic mice. Genes Chromosomes Cancer 25: 251-60.

F. Wiener, T.I. Kuschak, S. Ohno, S. Mai (1999) Deregulated expression of c-Myc in a translocation-negative plasmacytoma on extrachromosomal elements that carry IgH and myc genes. Proc. Natl Acad. Sci. USA 96: 13967-13972.

X. Xu, Z. Weaver, S.P. Linke, C. Li, J. Gotay, X.-W. Wang, C.C. Harris, T. Ried, C.-X. Deng (1999) Centrosome Amplification and a Defective G2-M Cell Cycle Checkpoint Induce Genetic Instability in BRCA1 Exon 11 Isoform-Deficient Cells. Mol. Cell 3: 389-395.

V.P.C.C. Yu, M. Koehler, C. Steinlein, M. Schmid, L.A. Hanakahi, A.J. van Gool, S.C. West, A.R. Venkitaraman (2000) Gross chromosomal rearrangements and genetic exchange between nonhomologous chromosomes following BRCA2 inactivation. Genes Dev. 14: 1400­1406.

D.B. Zimonjic, H. Zhang, Z. Shan, V. Factor, J. Trent, S.S. Thorgeirsson, N.C. Popescu (2001) DNA amplification associated with double minutes originating from chromosome 19 in mouse hepatocellular carcinoma. Cytogenet Cell Genet. 93: 114-116.

D.B. Zimonjic, J.L. Pollock, P. Westervelt, N.C. Popescu, T.J. Ley (2000) Acquired, nonrandom chromosomal abnormalities associated with the development of acute promyelocytic leukemia in transgenic mice. Proc Natl Acad Sci USA 97: 13306-13311.

Comparative SKY™genomics

R.G. Best, D. Diamond, E. Crawford, F.S. Grass, C. Janish, T.L. Lear, D. Soenksen, A.A. Szalay, C.M. Moore (1998) Baboon/human homologies examined by spectral karyotyping (SKY): a visual comparison. Cytogenet. Cell Genet. 82: 83-87.

K. Fatyol, K. Illies, A. A. Szalay, D. C. Diamond, C. Janish (2000) Mer22-related sequence elements form pericentric repetitive DNA families in primates. Mol. Gen. Genet. 262: 931-939.

C.M. Moore, C. Janish, C.A. Eddy, G.B. Hubbard, M.M. Leland, J. Rogers (1999) Cytogenetic and fertility studies of a rheboon, rhesus macaque (Macaca mulatta) x baboon (Papio hamadryas) cross: further support for a single karyotype nomenclature. Am J Phys Anthropol 110: 119-127.

S. Muller, J. Wienberg (2001) "Bar-coding" primate chromosomes: molecular cytogenetic screening for the ancestral hominoid karyotype. Hum Genet. 109: 85-94.

Spectral Fluorescence In Situ Hybridization (Spectral FISH)

Fan YS, Zhang Y, Speevak M, Farrell S, Jung JH, Siu VM. (2001) Detection of submicroscopic aberrations in patients with unexplained mental retardation by fluorescence in situ hybridization using multiple subtelomeric probes. Genet Med. 3: 416-421.

J. Fung, H.U. Weier, R.A. Pedersen (2001) Detection of structural and numerical chromosome abnormalities in interphase cells using spectral imaging. J Histochem Cytochem. 49: 797-798.

J. Fung, H.-U.G. Weier, J.D. Goldberg, R.A. Pedersen (2000) Multilocus genetic analysis of single interphase cells by spectral imaging. Hum Genet. 107: 615-622.

J. Fung, W. Hyun, P. Dandekar, R.A. Pedersen, H.U. Weier (1998) Spectral imaging in preconception/ preimplantation genetic diagnosis of aneuploidy: multicolor, multichromosome screening of single cells. J. Assist. Reprod. Genet. 15: 323-330.

M.L. Slovak, L. Tcheurekdjian, F.F. Zhang, J.L. Murata-Collins (2001) Simultaneous detection of multiple genetic aberrations in single cells by spectral fluorescence in situ hybridization. Cancer Res. 61: 831-836.

D.G. Soenksen, Y. Garini, I. Bar-Am (1996) Multicolor FISH using a novel spectral bio-imaging system. SPIE Proc., vol. 2678.

H.G. Weier, S. Munne, R.A. Lersch, H. Hsieh, J. Smida, X. Chen, J.R. Korenberg, R.A. Pedersen, J. Fung (2001) Towards a full karyotype screening of interphase cells: 'FISH and chip' technology. Mol Cell Endocrinol. 183 Suppl 1:S41-5.

H.-U.G. Weier, J. Smida, H. Zitzelsberger, R.A. Lersch, J. Hung, H.P. Hsieh, K. Salassidis, G. McNamara, R.A. Pedersen, J. Fung (2000) Cytogenetic Analysis of Interphase Cells Using Spectral Imaging Technology. SPIE Proc. BO 3920: 76-85.

Spectral Immunofluorescence

H. Tsurui, H. Nishimura, S. Hattori, S. Hirose, K. Okumura, T. Shirai (2000) Seven-color fluorescence imaging of tissue samples based on Fourier spectroscopy and singular value decomposition. J Histochem Cytochem. 48: 653-662.

Spectral Morphometry

I. Barshack, J. Kopolovic, Z. Malik, C. Rothmann (1999) Spectral morphometric characterization of breast carcinoma cells. Br. J. Cancer 79: 1613-1619.

L. Greenbaum, C. Rothmann, R. Lavie, Z. Malik (2000) Green fluorescent protein photobleaching: a model for protein damage by endogenous and exogenous singlet oxygen. Biol. Chem. 381: 1251­1258.

T. Hyman, C. Rothmann, A. Heller, Z. Malik, S. Salzberg (2001) Structural characterization of erythroid and megakaryocytic differentiation in Friend erythroleukemia cells. Exp Hematol. 29: 563-571.

O. Katsir, Z. Malik (1997) Toxic effects of gallium nitrate on Friend erythroleukemia cells. The Cancer Journal 10: 43-47.

R.M. Levenson, D.L. Farkas (1997) Digital spectral imaging for histopathology and cytopathology in Functional Imaging and Optical Manipulation of Living Cells. D.L. Farkas, B.J. Tromberg, Editors, Proc. SPIE 298: 123-135.

Macville MV, Van Der Laak JA, Speel EJ, Katzir N, Garini Y, Soenksen D, McNamara G, de Wilde PC, Hanselaar AG, Hopman AH, Ried T. (2001) Spectral imaging of multi-color chromogenic dyes in pathological specimens. Anal Cell Pathol. 22: 133-142.

Z. Malik, C. Rothmann, T. Cycowitz, Z.J. Cycowitz, A.M. Cohen (1998) Spectral morphometric characterization of B-CLL cells versus normal small lymphocytes. J. Histochem. Cytochem. 46: 1113-1118.

Z. Malik, I. Amit, C. Rothmann (1997) Subcellular localization of sulfonated tetraphenyl porphines in colon carcinoma cells by spectrally resolved imaging. Photochemistry Photobiology 65: 389-396.

Z. Malik, D. Cabib, R.A. Buckwald, A. Talmi, Y. Garini, S.G. Lipson (1996) Fourier transform multi-pixel spectroscopy for quantitative cytology. J. Microsc. 182: 133-140.

Z. Malik, M. Dishi, Y. Garini (1996) Fourier transform multi-pixel spectroscopy and spectral imaging of proto-porphyrin in single melanoma cells. Photochem. Photobiol. 63: 608-614.

Z. Malik, M. Dishi (1995) ALA mediated PDT of melanoma tumors: light-sensitizer interactions
determined by a novel spectral imaging system. Proceedings of Optical Methods for Tumor Treatment and Detection: Mechanisms and Techniques in Photodynamic Therapy IV, SPIE 2392: 152-158.

M.L. Miller, A. Andringa, K. Dixon, M.P. Carty (2002) Insights into UV-induced apoptosis: ultrastructure, trichrome stain and spectral imaging. Micron. 33: 157-166.

M.L. Miller, A. Andriga, J. Elliott, K. Conwell II, K. Dixon, M.P. Carty (1998) The morphological and spectral phenotype of apoptosis in HeLa cells varies following exposure to UV-C and the addition of inhibitors of ICE and CPP32. Cell Prolif. 31: 17-33.

T.H. Pham, F. Bevilacqua, T. Spott, J.S. Dam, B.J. Tromberg, S. Andersson-Engels (2000) The use of a non-contact Fourier interferometric, hyperspectral imaging system to quantify the absorption and reduced scattering coefficients of tissue-like turbid media over a broad spectral range. Conference on Lasers and Electro-Optics Europe, 2000. 353.

C. Rothmann, I. Barshack, A. Gil, I. Goldberg , J. Kopolovic, Z. Malik (2000) Potential use of spectral image analysis for the quantitative evaluation of estrogen receptors in breast cancer. Histol. Histopathol. 15: 1051-1057.

C. Rothmann, T. Levinshal, B. Timan, R.R. Avtalion, Z. Malik (2000) Spectral imaging of red blood cells in experimental anemia of Cyprinus carpio. Comp Biochem Physiol A Mol Integr Physiol. 125: 75-83.

C. Rothmann, Z. Malik, A.M. Cohen (1998) Spectrally resolved imaging of Cabot rings and Howell-Jolly bodies. Photochem. Photobiol. 68: 584-7.

C. Rothmann, I. Barshack, J. Kopolovic, Z. Malik (1998) Spectrally resolved morphometry of the nucleus in hepatocytes stained by four histological methods. Histochem. J. 30: 539-547.

C. Rothmann, I. Bar-Am, Z. Malik (1998) Spectral imaging for quantitative histology and cytogenetics. Histol. Histopathol. 13: 921-926.

C. Rothmann, A.M. Cohen, Z. Malik (1997) Chromatin condensation in erythropoiesis resolved by multipixel spectral imaging: Differentiation versus apoptosis. J. Histochem. Cytochem. 45: 1-12.

G. Siboni, C. Rothmann, B. Ehrenberg, Z. Malik (2001) Spectral imaging of MC540 during murine and human colon carcinoma cell differentiation. J Histochem Cytochem. 49: 147-154.

G. Taubes (1997) Spectral technique paints cells in vivid new colors. Science 276: 1990.

Spectral Bio-Imaging (non-SKY, non-spectral immunofluorescence, non-spectral morphometry)

I. Amit, Z. Malik, D. Kessel (1999) Photoproduct formation from a zinc benzochlorin iminium salt detected by fluorescence microscopy. Photochem. Photobiol. 69: 700-702.

D. Cabib, R.A. Buckwald, Y. Garini, D.G. Soenksen (1996) Spatially resolved Fourier transform spectroscopy (spectral imaging): a powerful tool for quantitative analytical microscopy, in Optical Diagnostics of Living Cells and Biofluids, D.L. Farkas, R.C. Leif, A.V. Priezzhev, T. Asakura, B.J. Tromberg; Eds. Proc. SPIE 2678: 278-291.

S. Katz, Z. Dubinsky, C. Rothmann, Z. Malik. (1997) Single-cell pigmentation of Porphyra linearis analyzed by Fourier transform multipixel spectroscopy and image analysis. J. Phycology. 33: 222-229.

J.M. Kirkwood, D.L. Farkas, A. Chakraborty, K.F. Dyer, D.J. Tweardy, J.L. Abernethy, H.D. Edington, S.S. Donnelly, D. Becker (1999) Systemic Interferon-alpha (IFN-alpha) Treatment Leads to Stat3 Inactivation in Melanoma Precursor Lesions. Mol. Med. (mol. online journal) 5: 0011-0020. ( Apr 14, 1999).

Z. Malik, D. Cabib, R.A. Buckwald, Y. Garini, D.G. Soenksen, (1995) Novel spectral imaging system combining spectroscopy with imaging applications for biology in Optical and Imaging Techniques in Biomedicine, H.-J. Foth, A. Lewis, H. Podbielska, M. Robert-Nicoud, H. Schneckenburger, A.J. Wilson, Eds., Proc. SPIE 2329: 180-184.

A. Orenstein, G. Kostenich, C. Rothmann, I. Barshack, Z. Malik (1998) Imaging of human skin lesions using multipixel Fourier transform spectroscopy. Lasers Med. Sci. 13: 112-118.

N. Simon-Blecher, Y. Achituv, Z. Malik (1996) Effect of epibionts on the microdistribution of chlorophyll in corals and its detection by fluorescence spectral imaging. Marine Biology 126: 757-763.

D.G. Soenksen, T.J. Sick, Y. Garini (1996) Use of a novel spectral bio-imaging system as an imaging oximeter in intact rat brain.. Proc. SPIE, vol. 2679.

E. Weizman, C. Rothmann, L. Greenbaum, A. Shainberg, M. Adamek, B. Ehrenberg, Z. Malik (2000) Mitochondrial localization and photodamage during photodynamic therapy with tetraphenylporphines. J Photochem Photobiol B. 59: 92-102.

K.W. Woodburn (2001) Intracellular localization of the radiation enhancer motexafin gadolinium using interferometric Fourier fluorescence microscopy. J Pharmacol Exp Ther. 297: 888-894.

K.W. Woodburn Q. Fan, D.R. Miles, D. Kessel, Y. Luo, S.W. Young (1997) Localization and efficacy analysis of the phototherapeutic lutetium texaphyrin (PCI-0123) in the murine EMT6 sarcoma model. Photochem. Photobiol. 65: 410-415.

A. Yamaguchi, K.W. Woodburn, M. Hayase, R.C. Robbins (2000) Reduction of vein graft disease using photodynamic therapy with motexafin lutetium in a rodent isograft model. Circulation 102[suppl III]:III-275-III-280.

P. Yang, D.L. Farkas, J.M. Kirkwood, J.L. Abernethy, H.D. Edington, D. Becker (2000) Macroscopic Spectral Imaging and Gene Expression Analysis of the Early Stages of Melanoma. Mol. Med. (mol. online journal) 5: 0785-0794.

SKY™ Reviews and Book Chapters

I. Bar-Am, M. Augustus, G. McNamara, T. Ried, E. Schröck (1998) Spectral karyotyping: New tools for multicolor chromosome analysis. Chapter 48 in T. Ried et al (ed).

J. Bayani, J. Squire (2001) Advances in the detection of chromosomal aberrations using spectral karyotyping.
Clin Genet. 59: 65-73.

S.H. Bigner, E. Schröck (1997) Molecular cytogenetics of brain tumors. J. Neuropathol. Exp. Neurol. 56: 1173-1181.

X. Bosch (2001) From epithelial cell to tumour cell. Lancet Oncol. 2: 70.

A.R. Brothman, T.M. Maxwell, J. Cui, D.A. Deubler, X.L. Zhu (1999) Chromosomal clues to the development of prostate tumors. Prostate303-312.

A.R. Brothman, X.L. Xhu, T. Maxwell, J. Cui, D.A. Duebler (1999) Advances in the cytogenetics of prostate cancer. J. Assoc. Genetic Technologists 25: 1-6.

N.J. Carpenter (2001) Molecular cytogenetics. Semin Pediatr Neurol. 8: 135-146.

S.S. Chang, H.F.L. Mark (1997) Emerging molecular cytogenetic technologies. Cytobios. 90: 7-22.

W. Check (1998) FISH leaps ahead with flying colors. CAP Today 12(4): 1: 73-78.

J.C. Cigudosa, M.J. Calasanz, J.L. Garcia Miranda (1999) [Multicolor spectral karyotyping (SKY) and its application to the cytogenetic diagnosis of multiple myeloma]. Sangre (Barc) 44: 301-304.

D.J. Demetrick (1999) Gone FISHin' for genes. CMAJ 161: 1138.

M. Di Filippantonio, T. Ried, G. McNamara, F.R. Bieber (1999) Microscopy and Image Analysis, 4.4.1-4.4.17 (Unit 4.4 in Supplement 23) in Current Protocols in Human Genetics. John Wiley & Sons. New York.

J. Drach, H. Kaufmann, E. Urbauer, S. Schreiber, J. Ackermann, H. Huber (2000) The biology of multiple myeloma. J Cancer Res Clin Oncol 126: 441-447.

D.H. Farkas (1999) DNA Simplified II. The Illustrated Hitchhiker's Guide to DNA. Everything you always wanted to know about DNA (so you could sound really intelligent at cocktail parties, staff meetings, and the like). AACC Press, Washington, D.C.

C. Fauth, M.R. Speicher (2001) Classifying by colors: FISH-based genome analysis. Cytogenetics and Cell Genetics 2001, 93: 1-10.

Y. Garini, M. Macville, S. du Manoir, R.A. Buckwald, M. Lavi, N. Katzir, D. Wine, I. Bar-Am, E. Schröck, T. Ried (1996) Spectral Karyotyping. Bioimaging 4: 65-72.

Going JJ, Gusterson BA. (1999) Molecular pathology and future developments. Eur J Cancer 35: 1895-1904.

S.M. Gollin (2001) Chromosomal alterations in squamous cell carcinomas of the head and neck: Window to the biology of disease. Head & Neck 23: 238-253.

H. Gundlach (2001) Digital microscopy for multiparameter FISH imaging. Anal Quant Cytol Histol. 23: 268-272.

T. Hassold, P. Hunt (2001) To err (meiotically) is human: the genesis of human aneuploidy. Nature Reviews Genetics 2: 280-291.

T. Hassold, S. Sherman, P. Hunt (2000) Counting cross-overs: characterizing meiotic recombination in mammals. Hum Mol Genet 9: 2409-2419.

O. Henegariu, N.A. Heerema, L.L. Wright, P. Bray-Ward, D.C. Ward, G.H. Vance (2001) Improvements in cytogenetic slide preparation: Controlled chromosome spreading, chemical aging and gradual denaturing. Cytometry 43: 101-109.

J.L. Hess (1998) Detection of chromosome translocations in leukemia: Is there a best way? Am J. Clin. Pathol. 109: 3-5.

T. Honda, E. Hidaka, I. Ueno (2000) [Molecular diagnostic tests and chromosome analyses]. Rinsho Byori 48: 31-37.

J. Inazawa, Y. Ariyama, T. Mori, T. Sakakura, T. Abe (1997) [Analysis of genomic alterations in neoplastic tumors by CGH and SKY]. Tanpakushitsu Kakusan Koso 42 (17 Suppl): 2767-2772.

E. Jordan, F.S. Collins (1997) National advisory council for human genome research summary of meeting May 19 - 20, 1997.

M. Jurkowska, C. Zekanowski, I. Malinowska, M. Zielenska (2001) [Molecular diagnosis of lymphomas and leukaemias]. Med Wieku Rozwoj. V(2):113-134. Polish.

Kelly L, Clark J, Gilliland DG. (2002) Comprehensive genotypic analysis of leukemia: clinical and therapeutic implications. Curr Opin Oncol. 14: 10-18. Review.

N. Kirkham, N.R. Lemoine (eds) (1998) Progress in Pathology, Volume 4. 260 pages, Edinburgh, Scotland, Churchill Livingstone, Harcourt Brace & Co, Ltd, 1998.

Kirsch IR, Green ED, Yonescu R, Strausberg R, Carter N, Bentley D, Leversha MA, Dunham I, Braden VV, Hilgenfeld E, Schuler G, Lash AE, Shen GL, Martelli M, Kuehl WM, Klausner RD, Ried T. (2000) A systematic, high-resolution linkage of the cytogenetic and physical maps of the human genome. Nat Genet. 24: 339-340.

T. Knutsen, T. Ried (2000) SKY: a comprehensive diagnostic and research tool. J. Assoc. Genetic Technologists 26: 3-15.

T. Knutsen, T. Veldman, H. Padilla-Nash, E. Schröck, M. Liyanage, T. Ried (1997) Spectral karyotyping: chromosomes in color. Applied Cytogenetics 23: 26-32.

M.R. Koehler, W. Graewe (1999) Spectral Karyotyping (SKY): Ein neues, molekular-zytogenetisches Verfahren zur Chromosomenanalyse in Klinik und Forschung. BIOspektrum 5: 69-71.

M.R. Koehler, W. Graewe (1999) Spectral Karyotyping (SKY): Ein neues, molekular-zytogenetisches Verfahren zur Chromosomenanalyse in Klinik und Forschung. Hamamatsu News 1/99: 12-14.

M.R. Koehler, C. Steinlein, E. Schröck, V. Yu, M. Nanni, M. Schmid, A. Venkitaraman, G. Calabrese, G. Palka, I. Bar-Am, Y. Garini (1999) Spectral bioimaging in modern cytogenetics and pathology. ECA Newsletter 4 (July 1999).

Lee C, Lemyre E, Miron PM, Morton CC. (2001) Multicolor fluorescence in situ hybridization in clinical cytogenetic diagnostics. Curr Opin Pediatr. 13: 550-555. Review.

R. Lewis (1996) Chromosome Charting Takes a Giant Step. Photonics Spectra (June 1996) 48-49

R. Lewis (1996) FISH technology ready to leap from lab to the clinic. Genetic Engineering News. (May 15, 1996)..

M. Macville, T. Veldman, H. Padilla-Nash, D. Wangsa, P. O'Brien, E. Schröck, T. Ried (1997) Spectral karyotyping, a 24-colour FISH technique for the identification of chromosomal rearrangements. Histochem. Cell Biol. 108: 299-305.

J. Marx (1996) New methods for expanding the chromosomal paint kit. Science 273: 430.

P.C. Nowell, J.D. Rowley, A.G. Knudson Jr. (1998) Cancer genetics, cytogenetics--defining the enemy within. Nature Medicine 4: 1107-11.

A.S. Patel, A.L. Hawkins, C.A. Griffin (2000) Cytogenetics and cancer. Curr Opin Oncol 12: 62-67

J. Pedersen-Bjergaard (2001) Molecular cytogenetics in cancer. Lancet 357: 491-492.

N.C. Popescu, D.B. Zimonjic (1997) Molecular cytogenetic characterization of cancer cell alterations. Cancer Genet. Cytogenet. 93: 10-21.

B. Pulverer, L. Anson, C. Surridge, L. Allen (2001) Cancer (introduction to Nature Insights Cancer). Nature 411: 335.

V.K. Rao (1998) Course in advanced molecular cytogenetics. Pathology 30: 428-429.

L. Resor, T.J. Bowen, A. Wynshaw-Boris (2001) Unraveling human cancer in the mouse: recent refinements to modeling and analysis. Hum Mol Genet. 10: 669-675.

T. Rich, R.L. Allen, A.H. Wyllie (2000) Defying death after DNA damage. Nature 407: 777-783.

T. Ried, E. Schröck, Y. Ning, J. Wienberg (1998) Chromosome painting: a useful art. Hum. Mol. Genet. 7: 1619-1626.

T. Ried, M. Liyanage, S. du Manoir, K. Heselmeyer, G. Auer, M. Macville, E. Schröck (1997) Tumor cytogenetics revisited: comparative genomic hybridization and spectral karyotyping. J. Mol. Med. 75:801-814.

T. Ried, M. Koehler, H. Padilla-Nash, E. Schröck (1997) Chromosome analysis by spectral karyotyping. In: Cells. A Laboratory Manual. D.L. Spector, R.D. Goldman, L.A. Leinwand (eds.), Cold Spring Harbor Laboratory Press, New York.

T. Ried (1997) Images in neuroscience. Molecular biology, VI. Metaphase preparation of normal human chromosomes with spectral karyotyping. Am J Psychiatry 154: 447.

T. Ried (1997) Images in neuroscience. Spectral karyotyping analysis in diagnostic cytogenetics. Am. J. Psychiatry 154: 594.

E. Schröck, H. Padilla-Nash (2000) Spectral karyotyping and multicolor fluorescence in situ hybridization reveal new tumor-specific chromosomal aberrations. Semin. Hematol. 37: 334-347.

S. Schwartz (1999) Molecular cytogenetics: Show me the colors (invited editorial). Genetics In Medicine 1: 178-180.

M. Shuster, U. Bockmuhl, S.M. Gollin (1997) Early Experiences with SKY: A Primer for the Practicing Cytogenetic Technologist. Applied Cytogenetics 23(2): 33-37.

G. Sozzi, M.A. Testi, C.M. Croce (1999) Advances in cancer cytogenetics, J. Cell. Biochem. 75: 173-182.

E.J.M. Speel (1999) Detection and amplification systems for sensitive, multiple-target DNA and RNA in situ hybridization: looking inside cells with a spectrum of colors. Histochem. Cell Biol. 112: 89-113.

A.K. Stewart, A.C.Schuh (2000) White cells 2: impact of understanding the molecular basis of haematological malignant disorders on clinical practice. The Lancet 355: 1447-1453.

M. Stumm, H. Tönnies, P. F. Wieacker (1999) Review: Molecular cytogenetic techniques for the diagnosis of chromosomal abnormalities in childhood disease. European J. Pediatrics 158: 531-536.

S. Tohda & N. Nara(2001) Molecular diagnostic tests in hematologic diseases. Rinsho Byori 49: 205-209. Japanese.

J.A. Toretsky, L.J. Helman (1997) Cytogenetics and experimental models. Curr. Opin. Oncol. 9: 342-347.

T.H. Veldman, T. Knutsen, Y. Ning, H. Padilla-Nash, E. Schröck, T. Ried (1997) Spectral Karyotyping (Chapter 14) in M.J. Barch, T. Knutsen, J. Spurbeck (editors) The AGT Cytogenetics Laboratory Manual, Third Edition. The Association of Genetic Technologists. Lippincott-Raven Publishers, Philadelphia. Pages 591-595.

B. Wilcox (1997) Genetic Technology: The Brave New World? Family Futures 1: 4-5.

The SpectraCube® Technology

D. Cabib, R.A. Buckwald, Y. Garini, D.G. Soenksen (1996) Spectrally resolved Fourier transform spectroscopy (Spectral Imaging): a powerful tool for quantitative analytical microscopy. Proc. SPIE, vol. 2678.

Y. Garini, N. Katzir, D. Cabib, R.A. Buckwald, D.G. Soenksen, Z. Malik (1996) Spectral bio-imaging in X.F. Wang, B. Herman (eds.) Fluorescence Imaging Spectroscopy and Microscopy, chapter 4, Chemical Analysis Series, 137: 87-124 (John Wiley and Sons).

M. Lavi, U. Milman, D. Cabib, Y. Garini, A. Gil, T. Juta and M. Adel (1998) A new compact design interferometer based spectral imaging system for bio-medical applications. Proc. SPIE, vol. 3261: p. 313-321. [Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing V, Carol J. Cogswell; Jose-Angel Conchello; Tony Wilson; Thomas T. Lu; Jeremy M. Lerner; Eds.,

Z. Malik, D. Cabib, R. A. Buckwald, Y. Garini, D. Soenksen (1994) A novel spectral imaging system combining spectroscopy with imaging - applications for biology. Proceedings of Optical and Imaging Techniques in Biomedicine. 2329: 180.

Additional ASI Publications

K. Fatyol, K. Illies, A. A. Szalay, D. C. Diamond, C. Janish (2000) Mer22-related sequence elements form pericentric repetitive DNA families in primates. MGG - Molecular and General Genetics262: 931-939.


 

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